Issue |
RAIRO-Oper. Res.
Volume 57, Number 3, May-June 2023
Graphs, Combinatorics, Algorithms and Optimization
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Page(s) | 1045 - 1058 | |
DOI | https://doi.org/10.1051/ro/2023052 | |
Published online | 11 May 2023 |
- V. Bafna and P.A. Pevzner, Genome rearrangements and sorting by reversals. SIAM J. Comput. 25 (1996) 272–289. [CrossRef] [MathSciNet] [Google Scholar]
- A. Bergeron, J. Mixtacki and J. Stoye, A unifying view of genome rearrangements, in Proc. of WABI. Vol. 4175 of LNBI Springer Berlin Heidelberg (2006) 163–173. [Google Scholar]
- A. Caprara, The reversal median problem. INFORMS J. Comput. 15 (2003) 93–113. [CrossRef] [MathSciNet] [Google Scholar]
- D. Doerr, M. Balaban, P. Feijão and C. Chauve, The gene family-free median of three. Algorithm Mol. Biol. 12 (2017) 1–14. [CrossRef] [Google Scholar]
- P. Feijão and J. Meidanis, SCJ: a breakpoint-like distance that simplifies several rearrangement problems. IEEE/ACM Trans. Comput. Biol. Bioinf. 8 (2011) 1318–1329. [CrossRef] [PubMed] [Google Scholar]
- G. Fertin, A. Labarre, I. Rusu, E. Tannier and S. Vialette, Combinatorics of Genomes Rearrangements. The MIT Press (2009). [CrossRef] [Google Scholar]
- S. Hannenhalli and P. Pevzner, Transforming men into mice (polynomial algorithm for genomic distance problem), in Proc. of FOCS 1995. IEEE (1995) 581–592. [Google Scholar]
- G. Jean and M. Nikolski, Genome rearrangements: a correct algorithm for optimal capping. Inf. Process. Lett. 104 (2007) 14–20. [CrossRef] [Google Scholar]
- J. Kováč, On the complexity of rearrangement problems under the breakpoint distance. J. Comput. Biol. 21 (2013) 1–15. [Google Scholar]
- E. Tannier, C. Zheng and D. Sankoff, Multi-chromosomal median and halving problems under different genomic distances. BMC Bioinf. 10 (2009) 1–15. [CrossRef] [Google Scholar]
- A.W. Xu, DCJ median problems on linear multichromosomal genomes: graph representation and fast exact solutions, in Proc. of RECOMB-CG. Vol. 5817 of LNCS. Springer Berlin Heidelberg (2009) 70–83. [Google Scholar]
- A.W. Xu, A fast and exact algorithm for the median of three problem: a graph decomposition approach. J. Comput. Biol. 16 (2009) 1369–1381. [CrossRef] [MathSciNet] [PubMed] [Google Scholar]
- A.W. Xu and D. Sankoff, Decompositions of multiple breakpoint graphs and rapid exact solutions to the median problem, in Proc. of WABI. Vol. 5251 of LNBI. Springer (2008) 25–37. [Google Scholar]
- S. Yancopoulos, O. Attie and R. Friedberg, Efficient sorting of genomic permutations by translocation, inversion and block interchanges. Bioinformatics 21 (2005) 3340–3346. [CrossRef] [PubMed] [Google Scholar]
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